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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
379
ATAC-seq
73
snATAC-seq
5
DNase-seq
3
FAIRE-seq
Assay category
1574
DNA binding
1439
Transcription
460
DNA accessibility
44
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
92
February, 2023
82
August, 2021
49
February, 2021
42
May, 2022
23
October, 2019
18
May, 2021
11
May, 2023
10
April, 2020
8
January, 2021
8
July, 2019
6
November, 2019
4
August, 2017
3
January, 2018
3
October, 2017
1
November, 2020
Available data
418
bed narrowPeak
314
bam
299
bigWig
209
bigBed narrowPeak
202
bed bed3+
199
bed broadPeak
bigBed broadPeak
64
xls
41
fastq
21
zippedFastqFolder
12
bed bed3
12
tsv
7
bed bedgraph
4
txt
1
tar
Organism
459
Homo sapiens
Biosample type
218
tissue
189
primary cell
42
in vitro differentiated cells
11
cell line
Organ
pancreas
107
epithelium
85
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
25
connective tissue
24
liver
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
6
adipose tissue
5
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
394
AMP
48
HPAP
10
LungMap
8
T1D
Genome assembly (visualization)
196
hg19
176
GRCh38
Lab
283
AMP-T2D consortium
81
Katalin Susztak, Upenn
48
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
28
audit script error
23
inconsistent ontology term
1
inconsistent replicate
organ_slims!
pancreas
thymus
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
460 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
coronary artery
36
liver
20
retina
15
pigmented layer of retina
12
+ See 30 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
+ See 36 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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