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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
42
DNA accessibility
28
Transcription
DNA binding
1
DNA methylation
Date released
31
February, 2023
19
April, 2020
19
October, 2019
4
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
31
bed narrowPeak
6
tsv
4
bam
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
bigWig
1
bed bedMethyl
1
bigBed bedMethyl
Organism
75
Homo sapiens
Biosample type
74
tissue
2
primary cell
Organ
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
19
LungMap
Genome assembly (visualization)
32
hg19
4
GRCh38
Lab
57
AMP-T2D consortium
19
Xin Sun, UCSD
organ_slims!
pancreas
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
76 results
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ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
RRBS
tissue
retina
15
3
3
lung
10
9
1
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
1
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