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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
65
ChIP-seq
41
ATAC-seq
8
snATAC-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
81
Transcription
65
DNA binding
53
DNA accessibility
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
150
February, 2021
39
February, 2023
27
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
7
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
1
May, 2021
Available data
133
bam
119
bigWig
95
bed narrowPeak
88
txt
63
tsv
60
bigBed narrowPeak
60
fastq
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
289
Homo sapiens
Biosample type
214
tissue
61
cell line
14
primary cell
Organ
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
280
AMP
9
T1D
Genome assembly (visualization)
159
hg19
126
GRCh38
Lab
280
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
organ_slims!
pancreas
BIOSAMPLE
ASSAY
289 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
tissue
bone element
84
bone tissue
58
islet of Langerhans
14
2
1
4
retina
3
15
3
pigmented layer of retina
2
12
+ See 12 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
megakaryocyte
1
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