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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
29
ATAC-seq
22
DNase-seq
19
total RNA-seq
8
snATAC-seq
4
pCHi-C
1
RRBS
Assay category
65
DNA binding
59
DNA accessibility
19
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
31
February, 2023
27
December, 2018
25
June, 2019
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
1
July, 2019
Available data
105
bed narrowPeak
85
bam
79
bigWig
78
bigBed narrowPeak
60
fastq
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
148
Homo sapiens
Biosample type
74
tissue
61
cell line
13
primary cell
Organ
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
140
AMP
8
T1D
Genome assembly (visualization)
107
hg19
78
GRCh38
Lab
140
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
organ_slims!
pancreas
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
snATAC-seq
pCHi-C
RRBS
tissue
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
renal pelvis
10
left renal pelvis
4
+ See 1 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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