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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
total RNA-seq
65
ChIP-seq
18
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
405
Transcription
65
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
25
histone
25
histone modification
23
control
17
transcription factor
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
Date released
394
February, 2021
49
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
450
bam
425
bigWig
401
tsv
44
fastq
21
bed narrowPeak
10
bigBed narrowPeak
tagAlign
6
bed bed3+
4
bed bed3
4
txt
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
498
Homo sapiens
Biosample type
496
tissue
2
primary cell
1
in vitro differentiated cells
Organ
pancreas
705
liver
662
connective tissue
517
epithelium
483
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
499
AMP
Genome assembly (visualization)
437
hg19
432
GRCh38
Lab
499
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
pancreas
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
499 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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