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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
77
DNA accessibility
74
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
control
12
transcription factor
6
RNA binding protein
Date released
47
April, 2019
35
February, 2023
33
June, 2019
15
May, 2019
14
July, 2019
12
February, 2021
6
October, 2019
5
March, 2020
Available data
151
bed narrowPeak
121
bam
114
bigWig
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
167
Homo sapiens
Biosample type
148
tissue
12
cell line
7
primary cell
Organ
490
liver
pancreas
293
epithelium
234
brain
217
kidney
168
connective tissue
167
heart
147
vasculature
142
blood vessel
98
limb
97
bone element
81
musculature of body
74
artery
66
adipose tissue
63
blood
63
bodily fluid
41
eye
27
nerve
20
vein
18
ureter
17
spleen
16
embryo
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
167
AMP
Genome assembly (visualization)
156
GRCh38
118
hg19
Lab
167
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
pancreas
target.investigated_as!
control
assay_slims!
Transcription
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
coronary artery
3
36
2
heart left ventricle
29
2
3
4
1
1
1
heart
12
18
1
1
heart right ventricle
11
1
2
1
1
right atrium auricular region
7
1
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
3
3
1
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