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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
ChIP-seq
Assay category
159
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
48
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
59
August, 2017
35
December, 2017
35
May, 2021
16
February, 2018
14
August, 2021
Available data
114
bam
113
bigWig
108
bed narrowPeak
98
fastq
28
tagAlign
14
bed bed3+
14
bigBed narrowPeak
Organism
159
Homo sapiens
Biosample type
592
tissue
384
cell line
189
primary cell
159
in vitro differentiated cells
2
stem cell
Organ
59
connective tissue
18
epithelium
15
embryo
14
liver
pancreas
Project
159
AMP
Genome assembly (visualization)
113
GRCh38
112
hg19
Lab
127
AMP-T2D consortium
32
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
pancreas
target.investigated_as!
control
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
in vitro differentiated cells
adipocyte
59
embryonic stem cell
34
hepatocyte
14
neural progenitor cell
14
pancreatic endoderm
13
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