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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
134
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
143
DNA binding
136
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
46
transcription factor
control
9
RNA binding protein
2
chromatin remodeller
Date released
122
May, 2021
60
August, 2017
35
August, 2021
31
February, 2018
26
February, 2021
19
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
241
bam
239
bigWig
129
tsv
114
bed narrowPeak
103
fastq
28
tagAlign
20
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
337
Homo sapiens
Biosample type
2099
tissue
637
primary cell
496
cell line
337
in vitro differentiated cells
9
stem cell
Organ
89
connective tissue
22
embryo
epithelium
14
liver
pancreas
1
adipose tissue
1
heart
Project
337
AMP
Genome assembly (visualization)
272
hg19
240
GRCh38
4
hg18
Lab
288
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
pancreas
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
337 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
59
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
34
7
6
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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