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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
105
ChIP-seq
31
DNase-seq
31
total RNA-seq
25
single cell RNA-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
161
DNA accessibility
105
DNA binding
58
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
95
histone
95
histone modification
51
broad histone mark
44
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
52
May, 2021
47
June, 2019
31
October, 2019
28
July, 2019
17
August, 2017
12
February, 2023
11
July, 2018
10
April, 2018
6
November, 2017
6
November, 2020
5
December, 2019
4
May, 2019
3
August, 2021
3
February, 2021
2
June, 2018
1
March, 2020
1
November, 2018
1
September, 2018
Available data
231
bigWig
215
bam
143
bed narrowPeak
87
bigBed narrowPeak
63
tsv
49
bed broadPeak
49
bigBed broadPeak
47
fastq
37
bed bed3+
14
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
342
Homo sapiens
Biosample type
2047
tissue
491
cell line
355
in vitro differentiated cells
342
primary cell
7
stem cell
Organ
233
epithelium
pancreas
35
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
342
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
253
hg19
160
GRCh38
Lab
310
AMP-T2D consortium
32
Kyle Gaulton, UCSD
Audit category:
39
inconsistent ontology term
1
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
pancreas
target.investigated_as!
control
BIOSAMPLE
ASSAY
342 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
2
30
2
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
15
2
2
1
monocyte
15
1
1
1
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