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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
166
total RNA-seq
129
ATAC-seq
110
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
278
Transcription
217
DNA accessibility
189
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
47
June, 2019
42
February, 2021
40
September, 2020
31
October, 2019
28
July, 2019
17
August, 2017
11
July, 2018
10
April, 2018
8
January, 2021
6
November, 2017
6
November, 2020
5
December, 2019
4
May, 2019
3
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
411
bigWig
395
bam
227
bed narrowPeak
159
tsv
147
fastq
98
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
719
Homo sapiens
Biosample type
tissue
719
primary cell
498
cell line
355
in vitro differentiated cells
9
stem cell
Organ
385
epithelium
pancreas
36
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
342
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
433
hg19
341
GRCh38
Lab
310
AMP-T2D consortium
236
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
44
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
pancreas
target.investigated_as!
control
biosample_type!
tissue
BIOSAMPLE
ASSAY
719 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
30
4
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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