Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
75
ChIP-seq
31
DNase-seq
29
total RNA-seq
25
single cell RNA-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
161
DNA accessibility
75
DNA binding
56
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
65
histone
65
histone modification
34
narrow histone mark
31
broad histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
47
June, 2019
31
October, 2019
28
July, 2019
20
May, 2021
17
August, 2017
12
February, 2023
11
July, 2018
10
April, 2018
6
November, 2017
6
November, 2020
5
December, 2019
4
May, 2019
3
August, 2021
3
February, 2021
2
June, 2018
1
March, 2020
1
November, 2018
1
September, 2018
Available data
215
bam
199
bigWig
113
bed narrowPeak
87
bigBed narrowPeak
63
tsv
49
bed broadPeak
49
bigBed broadPeak
47
fastq
35
bed bed3+
14
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
310
Homo sapiens
Biosample type
1825
tissue
461
cell line
310
primary cell
306
in vitro differentiated cells
7
stem cell
Organ
233
epithelium
pancreas
35
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
310
AMP
Genome assembly (visualization)
221
hg19
160
GRCh38
Lab
310
AMP-T2D consortium
236
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
1
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
pancreas
target.investigated_as!
control
BIOSAMPLE
ASSAY
310 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
15
2
2
1
monocyte
15
1
1
1
skeletal muscle myoblast
14
2
1
1
+ See 71 more…
See all biosamples
Download