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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
166
total RNA-seq
129
ATAC-seq
110
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
278
Transcription
217
DNA accessibility
179
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
43
June, 2019
42
February, 2021
40
September, 2020
31
October, 2019
28
July, 2019
15
August, 2017
11
July, 2018
10
April, 2018
8
January, 2021
6
November, 2020
5
December, 2019
3
August, 2021
3
May, 2019
3
November, 2017
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
401
bigWig
385
bam
217
bed narrowPeak
159
tsv
142
fastq
98
tagAlign
77
bigBed narrowPeak
73
zippedFastqFolder
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
709
Homo sapiens
Biosample type
2002
tissue
709
primary cell
307
in vitro differentiated cells
138
cell line
9
stem cell
Organ
380
epithelium
pancreas
35
connective tissue
31
kidney
31
vasculature
27
blood vessel
20
vein
13
liver
12
brain
12
musculature of body
10
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
332
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
423
hg19
332
GRCh38
Lab
300
AMP-T2D consortium
236
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
41
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
pancreas
target.investigated_as!
control
transcription factor
BIOSAMPLE
ASSAY
709 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
30
4
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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