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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
69
DNA binding
15
DNA methylation
6
DNA accessibility
Target of assay
histone modification
132
histone
77
broad histone mark
54
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
683
February, 2021
318
November, 2017
314
May, 2020
295
August, 2021
200
May, 2021
195
June, 2019
149
February, 2023
107
October, 2019
102
July, 2019
96
May, 2022
90
August, 2017
81
November, 2018
63
December, 2017
50
March, 2020
47
September, 2023
40
September, 2020
35
December, 2018
27
May, 2019
24
February, 2020
23
February, 2018
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
6
October, 2017
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
68
fastq
63
bam
48
bigWig
28
bed narrowPeak
14
bed bed3+
9
tagAlign
7
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
90
Homo sapiens
Biosample type
53
tissue
31
in vitro differentiated cells
6
primary cell
Organ
pancreas
56
connective tissue
25
adipose tissue
21
liver
15
epithelium
7
musculature of body
Project
90
AMP
Genome assembly (visualization)
52
hg19
46
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
pancreas
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver
15
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
adipose tissue
1
3
+ See 2 more…
in vitro differentiated cells
adipocyte
30
1
primary cell
skeletal muscle myoblast
3
1
2
See all biosamples
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