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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
263
single cell RNA-seq
189
ATAC-seq
175
total RNA-seq
87
RNA microarray
72
snATAC-seq
52
pCHi-C
24
DNase-seq
24
WGBS
6
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
72
DNA accessibility
Date released
27
February, 2021
21
May, 2022
10
April, 2020
8
January, 2021
6
August, 2021
Available data
27
fastq
21
zippedFastqFolder
Organism
71
Homo sapiens
Biosample type
56
primary cell
16
tissue
Organ
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
Project
48
HPAP
10
LungMap
8
T1D
6
AMP
Genome assembly (visualization)
hg19
Lab
48
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
Audit category:
27
audit script error
organ_slims!
pancreas
target.investigated_as!
narrow histone mark
assembly!
hg19
BIOSAMPLE
ASSAY
72 results
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snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
kidney
6
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