Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1158
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
Date released
13
July, 2019
6
August, 2017
3
February, 2023
Available data
17
bed bedMethyl
17
bigBed bedMethyl
4
fastq
Organism
22
Homo sapiens
Biosample type
10
primary cell
9
tissue
3
cell line
Organ
6
epithelium
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
19
AMP
3
T1D
Genome assembly (visualization)
17
hg19
Lab
19
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
pancreas
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
22 results
search-icon
table-tab-icon
Clear Filters
RRBS
CRISPR genome editing followed by DNA sequencing
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
kidney
1
liver
1
+ See 1 more…
cell line
EndoC_BH1
3
See all biosamples
Download