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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ChIP-seq
129
ATAC-seq
127
total RNA-seq
31
DNase-seq
28
single cell RNA-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
199
DNA binding
169
DNA accessibility
157
Transcription
11
DNA methylation
7
3D chromatin structure
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
23
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
51
June, 2019
34
October, 2019
31
July, 2019
16
August, 2017
12
February, 2023
11
July, 2018
10
April, 2018
8
January, 2021
6
November, 2017
6
November, 2020
5
December, 2019
4
August, 2021
4
May, 2019
3
February, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
411
bigWig
405
bam
217
bed narrowPeak
162
tsv
100
tagAlign
77
bigBed narrowPeak
46
fastq
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
560
Homo sapiens
Biosample type
2195
tissue
560
primary cell
343
in vitro differentiated cells
210
cell line
10
stem cell
Organ
249
epithelium
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
355
AMP
204
T1D
1
ITG
Genome assembly (visualization)
433
hg19
335
GRCh38
Lab
320
AMP-T2D consortium
239
Kyle Gaulton, UCSD
Klaus Kaestner, Upenn
1
ITG
Audit category:
46
inconsistent ontology term
1
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
pancreas
target.investigated_as!
transcription factor
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
560 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
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