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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
30
ChIP-seq
Assay category
199
DNA accessibility
30
DNA binding
Target of assay
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
17
November, 2017
13
August, 2017
8
October, 2019
7
November, 2018
1
November, 2020
Available data
2237
bam
2061
bigWig
1183
tsv
1147
bed narrowPeak
556
bigBed narrowPeak
445
fastq
371
tagAlign
252
bed broadPeak
232
bed bed3+
229
bigBed broadPeak
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
2
ibed
1
tagAlign bed3+
1
tar
1
vcf
Organism
229
Homo sapiens
Biosample type
170
tissue
44
primary cell
14
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
19
liver
18
ureter
15
vasculature
12
blood vessel
9
connective tissue
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
229
AMP
Genome assembly (visualization)
224
GRCh38
208
hg19
Lab
229
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
organ_slims!
pancreas
target.investigated_as!
transcription factor
month_released!
January, 2018
BIOSAMPLE
ASSAY
229 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 18 more…
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
See all biosamples
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