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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
103
total RNA-seq
17
pCHi-C
8
snATAC-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
142
DNA binding
103
Transcription
13
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
transcription factor
8
control
5
RNA binding protein
Date released
222
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
220
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
280
Homo sapiens
Biosample type
239
primary cell
35
in vitro differentiated cells
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
210
T1D
70
AMP
Genome assembly (visualization)
220
hg19
180
GRCh38
Lab
2720
AMP-T2D consortium
280
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
23
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
organ_slims!
pancreas
target.investigated_as!
transcription factor
recombinant protein
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
25
5
5
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
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