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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
Assay category
22
DNA binding
Target of assay
25
transcription factor
22
histone
22
histone modification
13
chromatin remodeller
12
broad histone mark
10
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
11
November, 2017
7
December, 2017
2
August, 2017
2
February, 2018
Available data
22
bam
22
bigWig
22
fastq
20
bed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
bigBed narrowPeak
11
tagAlign
6
bed bed3+
Organism
22
Homo sapiens
Biosample type
11
cell line
7
in vitro differentiated cells
2
stem cell
1
primary cell
1
tissue
Organ
12
liver
pancreas
5
epithelium
2
embryo
Project
22
AMP
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
22
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
cell line
HepG2
11
in vitro differentiated cells
definitive endodermal cell
3
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
2
primary cell
skeletal muscle myoblast
1
tissue
liver
1
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