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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
Assay category
143
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
51
August, 2017
32
May, 2021
30
December, 2017
16
February, 2018
14
August, 2021
Available data
105
bam
87
fastq
75
bigWig
70
bed narrowPeak
28
tagAlign
15
bed bed3+
9
bigBed narrowPeak
Organism
143
Homo sapiens
Biosample type
583
tissue
465
cell line
164
primary cell
143
in vitro differentiated cells
2
stem cell
Organ
51
connective tissue
14
embryo
14
epithelium
10
liver
2
pancreas
Project
143
AMP
Genome assembly (visualization)
80
GRCh38
79
hg19
Lab
116
AMP-T2D consortium
27
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
organ_slims!
pericardium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
in vitro differentiated cells
adipocyte
51
embryonic stem cell
29
neural progenitor cell
14
pancreatic endoderm
12
hepatocyte
10
definitive endodermal cell
6
primitive gut cell
6
Posterior foregut
4
cardiomyocytes
3
Hepatic endoderm
2
endocrine cell
2
pancreatic PP cell
2
posterior foregut
2
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