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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
Assay category
163
DNA accessibility
139
Transcription
74
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
42
histone
42
histone modification
23
narrow histone mark
19
broad histone mark
19
control
13
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
23
April, 2019
21
October, 2019
13
December, 2017
9
February, 2018
5
May, 2019
3
June, 2019
Available data
74
bam
53
bed narrowPeak
53
bigWig
24
bigBed narrowPeak
22
fastq
3
bed bed3+
Organism
74
Homo sapiens
Biosample type
27
tissue
22
in vitro differentiated cells
15
primary cell
10
cell line
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
74
AMP
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
74
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
pericardium
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
tissue
kidney
27
in vitro differentiated cells
pancreatic endoderm
18
Hepatic endoderm
4
primary cell
epithelial cell of proximal tubule
10
kidney epithelial cell
5
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
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