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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
41
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
23
control
18
histone
18
histone modification
10
narrow histone mark
8
broad histone mark
Date released
25
November, 2017
12
February, 2020
8
October, 2019
6
July, 2019
6
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
28
bam
14
tsv
8
bigWig
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
63
Homo sapiens
Biosample type
59
tissue
4
primary cell
Organ
197
pancreas
154
epithelium
149
kidney
138
liver
127
heart
93
bone element
92
connective tissue
63
brain
55
eye
46
adipose tissue
43
vasculature
42
blood vessel
41
musculature of body
26
limb
20
lung
13
artery
12
nerve
10
vein
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
GRCh38
147
hg19
Lab
63
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
pericardium
assembly!
GRCh38
files.file_type!
fastq
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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