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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
34
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
9
control
5
nucleotide modification
2
RNA binding protein
2
chromatin remodeller
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
106
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
40
bam
35
bigWig
35
fastq
32
bed narrowPeak
31
bigBed narrowPeak
4
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
51
Homo sapiens
Biosample type
34
cell line
11
tissue
6
primary cell
Organ
27
blood
27
bodily fluid
10
pancreas
7
spleen
6
connective tissue
6
epithelium
1
liver
Project
51
AMP
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
41
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
1
inconsistent control
organ_slims!
pericardium
files.file_type!
csv
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
GM12878
27
EndoC_BH1
6
HepG2
1
tissue
spleen
7
islet of Langerhans
4
primary cell
osteoblast
4
1
1
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