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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
63
ChIP-seq
2
ATAC-seq
1
snATAC-seq
Assay category
179
DNA accessibility
63
DNA binding
Target of assay
47
histone
47
histone modification
26
broad histone mark
21
narrow histone mark
13
transcription factor
3
control
2
RNA binding protein
Date released
163
June, 2019
52
August, 2017
9
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
2
September, 2017
1
March, 2019
1
May, 2022
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
236
Homo sapiens
Biosample type
242
tissue
61
cell line
59
primary cell
26
in vitro differentiated cells
3
stem cell
Organ
68
kidney
46
musculature of body
41
pancreas
36
brain
36
limb
27
heart
18
ureter
7
adipose tissue
7
connective tissue
6
liver
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
1
spleen
Project
242
AMP
Genome assembly (visualization)
225
hg19
219
GRCh38
Lab
240
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
pericardium
BIOSAMPLE
ASSAY
242 results
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DNase-seq
ChIP-seq
ATAC-seq
snATAC-seq
tissue
islet of Langerhans
27
2
heart
18
brain
14
3
muscle of arm
17
skeletal muscle tissue
13
1
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