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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
DNase-seq
108
ChIP-seq
2
ATAC-seq
Assay category
196
DNA accessibility
108
DNA binding
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
66
November, 2017
41
August, 2017
8
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
3182
bam
2997
bigWig
1670
bed narrowPeak
1530
tsv
1328
fastq
946
bigBed narrowPeak
392
tagAlign
304
bed broadPeak
267
bigBed broadPeak
259
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
31
bed bedMethyl
31
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
298
Homo sapiens
Biosample type
207
tissue
59
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
spleen
Project
304
AMP
Genome assembly (visualization)
281
hg19
266
GRCh38
Lab
302
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
pericardium
spleen
vasculature
BIOSAMPLE
ASSAY
304 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 41 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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