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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
3
ChIP-seq
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
8
Transcription
3
DNA binding
1
DNA accessibility
1
DNA sequencing
Target of assay
3
transcription factor
1
RNA binding protein
Date released
6
February, 2021
3
November, 2017
1
August, 2021
1
November, 2018
1
October, 2019
1
September, 2018
Available data
3391
bam
3168
bigWig
1817
bed narrowPeak
1599
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
6
tissue
4
cell line
3
primary cell
Organ
5
kidney
5
liver
1
blood vessel
1
epithelium
1
vasculature
1
vein
Project
13
AMP
Genome assembly (visualization)
4
hg19
Lab
12
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
audit script error
organ_slims!
pericardium
BIOSAMPLE
ASSAY
13 results
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Clear Filters
single cell RNA-seq
ChIP-seq
FAIRE-seq
whole genome sequencing assay
tissue
kidney
5
liver
1
cell line
HepG2
3
1
primary cell
pancreatic cell
2
endothelial cell of umbilical vein
1
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