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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
2
pCHi-C
Assay category
3
3D chromatin structure
Date released
3
October, 2022
2
March, 2020
Available data
3173
bam
2958
bigWig
1607
bed narrowPeak
1599
tsv
1358
fastq
832
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
135
bed broadPeak
98
bigBed broadPeak
86
bed bed3+
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Organ
3
epithelium
3
pancreas
Project
3
HPAP
2
AMP
Genome assembly (visualization)
5
hg19
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
3
audit script error
2
inconsistent ontology term
organ_slims!
pericardium
month_released!
June, 2019
BIOSAMPLE
ASSAY
5 results
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Hi-C
pCHi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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