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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
2
pCHi-C
Assay category
3
3D chromatin structure
Date released
3
October, 2022
2
March, 2020
Available data
2828
bigWig
2810
bam
1411
bed narrowPeak
1401
tsv
1008
fastq
776
bigBed narrowPeak
238
tagAlign
134
bed broadPeak
98
bigBed broadPeak
86
bed bed3+
22
hic
21
bedpe bed3+
18
bed bedMethyl
18
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Organ
3
epithelium
3
pancreas
Project
3
HPAP
2
AMP
Genome assembly (visualization)
5
hg19
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
3
audit script error
2
inconsistent ontology term
organ_slims!
pericardium
month_released!
June, 2019
BIOSAMPLE
ASSAY
5 results
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Hi-C
pCHi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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