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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
159
total RNA-seq
3
ATAC-seq
3
DNase-seq
3
small RNA-seq
1
WGBS
Assay category
360
DNA binding
162
Transcription
6
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
41
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
162
May, 2020
52
November, 2018
50
December, 2017
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
June, 2019
1
February, 2021
1
March, 2020
Available data
529
bam
526
bigWig
365
bed narrowPeak
343
fastq
324
bigBed narrowPeak
162
tsv
47
bed broadPeak
47
bigBed broadPeak
31
tagAlign
9
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
529
Homo sapiens
Biosample type
268
cell line
238
tissue
14
in vitro differentiated cells
9
primary cell
Organ
631
pancreas
551
connective tissue
529
liver
423
adipose tissue
276
epithelium
233
heart
187
brain
184
vasculature
182
blood vessel
126
artery
125
kidney
66
bone element
64
limb
54
blood
54
bodily fluid
31
nerve
29
embryo
16
spleen
12
musculature of body
12
vein
8
skeleton
pericardium
1
pituitary gland
Project
529
AMP
Genome assembly (visualization)
623
hg19
529
GRCh38
Lab
529
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
organ_slims!
pericardium
month_released!
June, 2019
BIOSAMPLE
ASSAY
529 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
cell line
HepG2
261
5
1
1
tissue
liver
75
147
2
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
Liver fetal (hepatocyte)
1
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