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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
46
single cell RNA-seq
18
small RNA-seq
14
RRBS
12
WGBS
10
MeRIP-seq
8
Hi-C
7
ATAC-seq
2
FAIRE-seq
1
DNase-seq
Assay category
117
Transcription
26
DNA methylation
10
DNA accessibility
8
3D chromatin structure
Target of assay
8
control
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
106
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
138
bigWig
136
bam
117
tsv
44
fastq
22
bed bedMethyl
22
bigBed bedMethyl
9
bed narrowPeak
5
bed bed3+
4
hdf5
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
171
Homo sapiens
Biosample type
86
tissue
79
primary cell
6
cell line
Organ
55
pancreas
52
epithelium
26
connective tissue
25
heart
18
brain
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
pericardium
1
eye
Project
171
AMP
Genome assembly (visualization)
144
hg19
133
GRCh38
Lab
161
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
organ_slims!
pericardium
BIOSAMPLE
ASSAY
171 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
MeRIP-seq
Hi-C
ATAC-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
6
1
4
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
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primary cell
pancreatic delta cell
7
osteoblast
4
1
1
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
+ See 30 more…
cell line
EndoC_BH1
6
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