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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
49
total RNA-seq
43
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
57
Transcription
43
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
317
August, 2017
276
October, 2019
218
June, 2019
192
May, 2021
134
February, 2021
123
May, 2022
120
August, 2021
120
May, 2019
98
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
56
September, 2020
52
May, 2020
47
September, 2023
40
May, 2024
36
July, 2019
35
December, 2018
33
September, 2018
25
January, 2019
24
February, 2018
19
April, 2020
17
March, 2020
16
January, 2021
15
November, 2019
15
October, 2017
11
November, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
July, 2018
4
May, 2023
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
1
March, 2019
Available data
tsv
57
txt
45
bigWig
39
bam
30
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
119
Homo sapiens
Biosample type
66
tissue
27
cell line
23
in vitro differentiated cells
4
primary cell
Organ
66
kidney
26
liver
6
epithelium
3
connective tissue
3
pancreas
1
adipose tissue
Project
120
AMP
Genome assembly (visualization)
33
hg19
16
GRCh38
Lab
64
Katalin Susztak, Upenn
28
AMP-T2D consortium
26
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
pericardium
assay_title!
ATAC-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
120 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
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