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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
55
total RNA-seq
47
WGBS
10
snATAC-seq
9
single cell RNA-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
1
pCHi-C
Assay category
91
DNA accessibility
64
Transcription
53
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
19
April, 2020
19
September, 2020
16
May, 2021
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
4
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
301
bigWig
257
fastq
157
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
225
Homo sapiens
Biosample type
164
primary cell
35
tissue
28
cell line
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
56
AMP
19
LungMap
Genome assembly (visualization)
28
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
50
AMP-T2D consortium
19
Xin Sun, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
organ_slims!
pericardium
files.file_type!
bam
BIOSAMPLE
ASSAY
227 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
single cell RNA-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 9 more…
tissue
lung
10
9
1
pigmented layer of retina
12
2
renal glomerulus
1
cell line
EndoC_BH1
18
1
6
2
1
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