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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
DNase-seq
4
pCHi-C
1
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
1
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
narrow histone mark
RNA binding protein
1
control
transcription factor
Date released
31
February, 2023
19
October, 2019
5
June, 2019
1
February, 2020
1
July, 2019
Available data
31
bed narrowPeak
5
bam
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
bigWig
1
bed bedMethyl
1
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
54
tissue
3
primary cell
Organ
854
pancreas
611
connective tissue
466
epithelium
462
adipose tissue
390
liver
336
heart
329
kidney
201
vasculature
197
blood vessel
166
brain
159
bone element
130
artery
107
limb
83
musculature of body
57
eye
35
nerve
26
embryo
20
lung
18
ureter
17
spleen
16
skeleton
16
vein
15
blood
15
bodily fluid
2
intestine
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
32
hg19
4
GRCh38
Lab
57
AMP-T2D consortium
organ_slims!
pericardium
target.investigated_as!
transcription factor
RNA binding protein
narrow histone mark
BIOSAMPLE
ASSAY
57 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
1
1
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