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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
133
ChIP-seq
62
ATAC-seq
11
snATAC-seq
8
DNase-seq
6
single cell RNA-seq
5
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
291
Transcription
133
DNA binding
83
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Target of assay
81
histone
81
histone modification
45
broad histone mark
36
control
36
narrow histone mark
18
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
40
May, 2021
39
November, 2019
24
May, 2022
19
February, 2023
18
October, 2019
9
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
446
bam
383
bigWig
275
tsv
213
fastq
132
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
516
Homo sapiens
Biosample type
505
tissue
primary cell
16
cell line
3
in vitro differentiated cells
Organ
777
liver
639
connective tissue
524
pancreas
488
adipose tissue
380
heart
303
kidney
262
brain
199
blood vessel
199
vasculature
139
artery
121
limb
81
musculature of body
74
bone element
61
blood
61
bodily fluid
56
eye
43
nerve
37
epithelium
31
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
494
AMP
30
T1D
Genome assembly (visualization)
423
hg19
396
GRCh38
Lab
461
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
organ_slims!
pericardium
biosample_type!
primary cell
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
524 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
278
50
58
7
1
6
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
4
2
1
2
1
1
1
endocrine pancreas
16
cell line
Panc1
13
1
1
EndoC_BH1
1
in vitro differentiated cells
pancreatic PP cell
3
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