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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ATAC-seq
73
total RNA-seq
60
ChIP-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
106
DNA accessibility
73
Transcription
60
DNA binding
49
DNA methylation
8
3D chromatin structure
Target of assay
50
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
104
May, 2022
56
February, 2023
36
August, 2017
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
8
March, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
May, 2019
1
November, 2018
Available data
114
fastq
80
zippedFastqFolder
67
bam
26
bed narrowPeak
12
bigWig
11
tagAlign
11
tsv
7
bed broadPeak
7
bedpe bed3+
7
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
308
Homo sapiens
Biosample type
154
primary cell
118
tissue
37
cell line
1
in vitro differentiated cells
Organ
310
pancreas
260
liver
229
epithelium
148
kidney
121
heart
118
connective tissue
93
bone element
67
adipose tissue
66
brain
55
eye
41
musculature of body
34
vasculature
32
blood vessel
24
limb
20
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
HPAP
140
AMP
28
T1D
Genome assembly (visualization)
657
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
102
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
inconsistent ontology term
4
audit script error
organ_slims!
pericardium
month_released!
May, 2019
assembly!
GRCh38
BIOSAMPLE
ASSAY
310 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
36
18
25
7
4
3
1
1
pancreas
1
3
4
1
1
1
1
body of pancreas
1
8
endocrine pancreas
2
cell line
EndoC_BH1
18
2
6
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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