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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
DNase-seq
21
ChIP-seq
1
Hi-C
Assay category
37
DNA accessibility
21
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
34
June, 2019
19
August, 2017
2
November, 2018
2
October, 2019
2
September, 2017
Available data
900
bam
847
bigWig
585
tsv
471
fastq
405
bed narrowPeak
185
bigBed narrowPeak
80
zippedFastqFolder
59
bed bed3+
51
bed broadPeak
37
bigBed broadPeak
25
tagAlign
14
bed bedMethyl
14
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
59
Homo sapiens
Biosample type
54
tissue
3
primary cell
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
59
AMP
Genome assembly (visualization)
59
GRCh38
54
hg19
Lab
59
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
pericardium
BIOSAMPLE
ASSAY
59 results
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DNase-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
21
heart
18
body of pancreas
4
heart left ventricle
3
coronary artery
2
+ See 4 more…
primary cell
cardiac fibroblast
3
cell line
Panc1
1
1
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