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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
5
RRBS
1
pCHi-C
1
snATAC-seq
Assay category
12
DNA binding
6
3D chromatin structure
5
DNA methylation
Transcription
1
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
3
March, 2020
2
June, 2019
1
May, 2019
1
May, 2022
Available data
bigWig
60
bed narrowPeak
51
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
25
Homo sapiens
Biosample type
22
tissue
3
primary cell
Organ
250
pancreas
168
epithelium
138
liver
110
kidney
107
connective tissue
97
bone element
73
heart
72
vasculature
71
blood vessel
63
adipose tissue
52
artery
52
brain
36
eye
28
limb
25
musculature of body
14
blood
14
bodily fluid
12
skeleton
11
lung
11
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
6
hg19
Lab
25
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
pituitary gland
assay_slims!
Transcription
files.file_type!
bigWig
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
Hi-C
RRBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
gastrocnemius medialis
4
psoas muscle
2
1
muscle of leg
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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