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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
906
ChIP-seq
16
Hi-C
Assay category
1227
Transcription
906
DNA binding
469
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
627
histone modification
626
histone
323
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
9
March, 2020
7
December, 2018
7
January, 2019
6
September, 2017
4
July, 2019
2
August, 2021
1
March, 2019
1
November, 2019
Available data
721
bam
614
bigWig
594
bed narrowPeak
377
bigBed narrowPeak
237
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
11
hic
10
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
915
Homo sapiens
Biosample type
922
tissue
488
cell line
289
primary cell
202
in vitro differentiated cells
3
stem cell
Organ
209
brain
156
liver
126
heart
121
pancreas
74
blood vessel
74
connective tissue
74
vasculature
73
adipose tissue
70
limb
35
musculature of body
35
nerve
28
artery
28
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
pituitary gland
Project
920
AMP
2
T1D
Genome assembly (visualization)
589
GRCh38
539
hg19
Lab
879
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
922 results
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ChIP-seq
Hi-C
tissue
liver
145
1
islet of Langerhans
71
3
left cardiac atrium
40
heart left ventricle
35
1
subcutaneous abdominal adipose tissue
36
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