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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
751
ChIP-seq
238
ATAC-seq
179
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
751
DNA binding
Target of assay
557
histone
557
histone modification
279
narrow histone mark
278
broad histone mark
139
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
Date released
189
October, 2019
128
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
40
May, 2024
15
October, 2017
7
December, 2018
7
January, 2019
6
November, 2018
6
September, 2017
2
March, 2020
Available data
589
bam
525
bigWig
505
bed narrowPeak
332
bigBed narrowPeak
167
tagAlign
143
fastq
35
bed broadPeak
25
bed bed3+
1
tagAlign bed3+
Organism
744
Homo sapiens
Biosample type
751
tissue
275
primary cell
183
in vitro differentiated cells
106
cell line
3
stem cell
Organ
209
brain
liver
123
heart
117
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
pituitary gland
Project
749
AMP
2
T1D
Genome assembly (visualization)
507
GRCh38
438
hg19
Lab
711
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
pituitary gland
liver
BIOSAMPLE
ASSAY
751 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
heart left ventricle
35
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