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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
73
DNA binding
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
50
August, 2017
23
October, 2018
1
August, 2018
1
March, 2020
Available data
38
fastq
37
bam
19
bigWig
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
tsv
Organism
75
Homo sapiens
Biosample type
74
tissue
1
in vitro differentiated cells
Organ
555
liver
220
brain
219
pancreas
158
connective tissue
137
heart
129
epithelium
103
vasculature
100
blood vessel
75
adipose tissue
66
limb
60
blood
60
bodily fluid
54
kidney
40
musculature of body
35
nerve
34
artery
22
embryo
21
spleen
17
vein
9
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
19
hg19
18
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
12
missing controlled_by
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ChIP-seq
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
1
in vitro differentiated cells
white fat cell
1
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