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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
97
ChIP-seq
17
DNase-seq
17
WGBS
1
Hi-C
Assay category
129
DNA accessibility
97
DNA binding
17
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
57
broad histone mark
31
narrow histone mark
9
transcription factor
6
RNA binding protein
3
recombinant protein
Date released
65
August, 2021
54
November, 2017
40
May, 2024
35
February, 2023
17
June, 2019
11
May, 2023
9
July, 2019
9
November, 2018
2
August, 2017
1
March, 2023
1
October, 2017
Available data
213
bed narrowPeak
132
bigWig
93
bam
73
bigBed narrowPeak
64
xls
41
tagAlign
17
bed bed3+
17
bed bedMethyl
17
bed broadPeak
17
bigBed bedMethyl
17
bigBed broadPeak
14
fastq
1
hic
Organism
244
Homo sapiens
Biosample type
236
tissue
5
cell line
2
primary cell
1
in vitro differentiated cells
Organ
84
heart
82
kidney
64
brain
37
blood vessel
37
vasculature
35
artery
epithelium
16
pancreas
5
liver
3
connective tissue
2
adipose tissue
2
spleen
1
limb
1
musculature of body
Project
243
AMP
1
ITG
Genome assembly (visualization)
hg19
2832
GRCh38
5
hg18
Lab
128
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
ITG
organ_slims!
pituitary gland
epithelium
assembly!
hg19
BIOSAMPLE
ASSAY
244 results
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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
tissue
kidney
75
left cardiac atrium
40
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
1
+ See 26 more…
cell line
HepG2
4
1
primary cell
cardiac fibroblast
1
chondrocytes
1
in vitro differentiated cells
neural progenitor cell
1
See all biosamples
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