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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1870
ChIP-seq
1533
total RNA-seq
530
ATAC-seq
356
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
57
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
55
DNA accessibility
Date released
84
February, 2021
21
May, 2022
16
January, 2021
10
April, 2020
7
August, 2021
2
February, 2023
Available data
84
txt
21
zippedFastqFolder
Organism
138
Homo sapiens
Biosample type
111
tissue
29
primary cell
Organ
84
bone element
10
lung
10
pancreas
8
blood
8
bodily fluid
6
kidney
1
adipose tissue
1
connective tissue
Project
91
AMP
21
HPAP
18
T1D
10
LungMap
Lab
85
AMP-T2D consortium
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
audit script error
organ_slims!
pituitary gland
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
140 results
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RNA microarray
snATAC-seq
tissue
bone element
84
lung
10
islet of Langerhans
6
kidney
6
pancreas
4
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primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
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