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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
640
total RNA-seq
253
ATAC-seq
176
DNase-seq
169
single cell RNA-seq
84
RNA microarray
26
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
833
DNA binding
823
Transcription
459
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
239
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
154
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
65
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
1
December, 2019
1
January, 2018
Available data
1466
bam
1348
bigWig
970
bed narrowPeak
670
tsv
551
bigBed narrowPeak
334
fastq
229
tagAlign
210
bed broadPeak
198
bed bed3+
174
bigBed broadPeak
151
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2270
Homo sapiens
Biosample type
2278
tissue
1055
primary cell
662
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
504
pancreas
adipose tissue
361
liver
313
heart
292
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2181
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1436
GRCh38
1329
hg19
Lab
1926
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
pituitary gland
adipose tissue
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
2278 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
298
67
1
6
4
3
1
1
4
liver
145
167
20
2
1
1
3
1
1
1
kidney
27
49
75
13
59
6
1
1
1
bone element
84
heart left ventricle
35
3
2
3
18
1
4
1
1
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