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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
20
total RNA-seq
5
WGBS
4
Hi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
139
DNA binding
21
Transcription
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
66
November, 2017
36
August, 2017
23
May, 2020
20
May, 2022
13
December, 2017
9
August, 2021
3
July, 2019
2
February, 2021
2
November, 2018
1
December, 2018
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
176
Homo sapiens
Biosample type
94
tissue
78
cell line
3
primary cell
1
in vitro differentiated cells
Organ
315
pancreas
217
epithelium
176
liver
147
kidney
131
connective tissue
93
bone element
77
adipose tissue
57
brain
35
vasculature
34
heart
33
blood vessel
27
musculature of body
23
eye
23
limb
19
lung
15
blood
15
bodily fluid
11
nerve
10
spleen
9
artery
9
embryo
9
vein
8
skeleton
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
pituitary gland
1
skin of body
1
thymus
Project
176
AMP
Genome assembly (visualization)
26
hg19
2
GRCh38
Lab
148
AMP-T2D consortium
20
Karen Mohlke, UNC
8
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
pituitary gland
files.file_type!
bed narrowPeak
tsv
BIOSAMPLE
ASSAY
176 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
RRBS
STARR-seq
DNase-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
71
1
2
2
1
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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