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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
260
DNA accessibility
258
DNA binding
189
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
151
May, 2021
134
May, 2022
100
May, 2020
48
July, 2018
47
February, 2021
47
September, 2018
45
August, 2017
43
April, 2018
43
September, 2020
31
June, 2019
28
October, 2019
18
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2018
1
November, 2020
Available data
461
bigWig
459
bam
295
bed narrowPeak
289
fastq
153
zippedFastqFolder
120
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
792
Homo sapiens
Biosample type
1562
tissue
792
primary cell
490
cell line
257
in vitro differentiated cells
10
stem cell
Organ
291
epithelium
265
pancreas
23
connective tissue
23
vasculature
21
blood vessel
20
kidney
18
vein
12
musculature of body
10
brain
8
blood
8
bodily fluid
7
liver
6
heart
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
451
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
434
hg19
341
GRCh38
Lab
418
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
pituitary gland
files.file_type!
bigBed broadPeak
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
792 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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