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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
81
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
81
DNA binding
Target of assay
46
histone
46
histone modification
38
narrow histone mark
31
control
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
399
May, 2021
396
August, 2017
342
November, 2017
341
May, 2020
319
August, 2021
303
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
501
bam
470
bigWig
237
bed narrowPeak
210
bigBed narrowPeak
189
tsv
187
bed bed3+
187
bed broadPeak
bigBed broadPeak
50
tagAlign
Organism
372
Homo sapiens
Biosample type
193
tissue
178
primary cell
1
cell line
Organ
194
liver
12
connective tissue
10
musculature of body
6
epithelium
5
heart
3
eye
3
kidney
Project
327
AMP
45
T1D
Genome assembly (visualization)
283
hg19
230
GRCh38
Lab
327
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
30
inconsistent ontology term
organ_slims!
pituitary gland
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
372 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 31 more…
cell line
HepG2
1
See all biosamples
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