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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
Assay category
49
DNA binding
Target of assay
29
histone
29
histone modification
20
transcription factor
15
narrow histone mark
14
broad histone mark
8
chromatin remodeller
5
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
16
August, 2017
11
December, 2017
November, 2018
February, 2018
1
October, 2018
Available data
49
bam
49
bigWig
49
fastq
47
bed narrowPeak
26
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
49
Homo sapiens
Biosample type
21
cell line
15
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
22
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
49
AMP
Genome assembly (visualization)
49
hg19
45
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
49
inconsistent control read length
5
inconsistent control run_type
4
inconsistent assembly
organ_slims!
pituitary gland
month_released!
November, 2018
February, 2018
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
cell line
HepG2
21
in vitro differentiated cells
adipocyte
6
Posterior foregut
2
definitive endodermal cell
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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