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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
4
FAIRE-seq
3
ATAC-seq
2
DNase-seq
Assay category
34
DNA binding
9
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
32
November, 2017
4
August, 2017
3
October, 2019
2
July, 2019
1
May, 2019
1
November, 2018
Available data
405
fastq
404
bam
232
bigWig
190
tsv
184
bed narrowPeak
161
txt
153
zippedFastqFolder
150
tagAlign
43
bigBed narrowPeak
38
bed broadPeak
21
bedpe bed3+
19
hic
18
bed bedMethyl
18
bigBed bedMethyl
16
bigBed broadPeak
13
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
43
Homo sapiens
Biosample type
32
cell line
6
tissue
3
primary cell
2
in vitro differentiated cells
Organ
32
liver
3
connective tissue
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
epithelium
1
kidney
1
limb
1
musculature of body
vasculature
1
vein
Project
43
AMP
Genome assembly (visualization)
GRCh38
881
hg19
Lab
43
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
organ_slims!
pituitary gland
vasculature
assembly!
GRCh38
BIOSAMPLE
ASSAY
43 results
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Clear Filters
ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
cell line
HepG2
32
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
muscle of leg
1
+ See 1 more…
primary cell
skeletal muscle myoblast
1
2
in vitro differentiated cells
adipocyte
2
See all biosamples
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