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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
108
ChIP-seq
52
single cell RNA-seq
41
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
257
DNA accessibility
108
DNA binding
52
Transcription
41
DNA methylation
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
134
May, 2022
66
November, 2017
41
August, 2017
19
September, 2020
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
3206
bam
3013
bigWig
1683
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
391
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
452
Homo sapiens
Biosample type
208
tissue
190
primary cell
59
cell line
1
in vitro differentiated cells
Organ
102
epithelium
101
pancreas
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
18
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
305
AMP
153
HPAP
Genome assembly (visualization)
282
hg19
267
GRCh38
Lab
303
AMP-T2D consortium
153
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
pituitary gland
vasculature
files.file_type!
hic
BIOSAMPLE
ASSAY
458 results
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Clear Filters
DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle myoblast
1
13
pancreatic acinar cell
4
+ See 17 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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