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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
ChIP-seq
68
DNase-seq
24
total RNA-seq
11
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
283
DNA binding
80
DNA accessibility
31
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
235
histone
235
histone modification
131
narrow histone mark
104
broad histone mark
48
control
3
RNA binding protein
3
transcription factor
Date released
153
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
356
bam
312
bigWig
294
bed narrowPeak
211
bigBed narrowPeak
117
tagAlign
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
33
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
406
Homo sapiens
Biosample type
385
tissue
21
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
406
AMP
Genome assembly (visualization)
312
GRCh38
259
hg19
Lab
406
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
406 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
muscle of leg
7
13
1
+ See 89 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
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